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Atomic Model of the Tarantula Thick Filament

Supplementary Information of:

Woodhead, J., Zhao, F., Craig, R., Egelman, E., Alamo, L. & Padrón, R.
Atomic model of a myosin filament in the relaxed state.
Nature 436: 1195-1199 , 2005. (pdf)


Click over the figure to see the movie (9.8Mb)
(Figure and movie courtesy of John Woodhead)

Atomic model of the thick filament from tarantula striated muscle. The surface of the three-dimensional reconstruction of the thick filament is shown in gray, together with the atomic models of two myosin molecules, indicating the intramolecular and intermolecular interactions.

Supplementary Figure 1
Longitudinal view of reconstruction density seen in projection, demonstrating arrowheads (cf. Fig. 1a of paper)
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Supplementary Figure 2
Longitudinal surface view of reconstruction, showing how the transverse view in Fig. 2a of paper is obtained (see Supplementary Movies S2 and S3).
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Supplementary Figure S3
Transverse view of reconstruction seen in projection, demonstrating high density of subfilaments and low density of filament core (cf. Fig. 2b of paper).
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Supplementary Movie 1
Movie of longitudinal view of reconstruction, including three complete crowns of heads, rotated around longitudinal axis (bare zone direction at top). Compare Fig. 1c of paper. Each crown contains four J-motifs separated by 90 degrees. The filament rotates 90 degrees, revealing all unique views, owing to the 4-fold rotational symmetry of the filament.
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Supplementary Movie 2
Movie showing how longitudinal view of reconstruction transforms into transverse view seen in Fig. 2a of paper.

This movie helps interpretation of Fig. 2a of the paper. It first shows a longitudinal view of the reconstruction, including only a single crown of heads (see Supplementary Fig. 2). The crown rotates 90 degrees, then becomes truncated to include only a 14.5 nm repeat (slightly shorter than a crown, owing to motif overlap). This segment then rotates 90 degrees towards the viewer to show a transverse view from the direction of the bare zone, as seen in Fig. 2a of the paper. The motif originally located at the front of the reconstruction is now seen to be located at the bottom, whereas the motif originally hidden at the back of the reconstruction is now at the top. The segment now rotates 90 degrees around the filament axis to produce an identical view, illustrating the 4-fold rotational symmetry. Finally, the segment is rotated in three 30 degree steps to simulate the views obtained when moving by 14.5 nm steps along the filament axis away from the bare zone: the helical symmetry of the tarantula filament is such that each segment is rotated 30 degrees relative to the previous one (see Supplementary Movie 3).

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Supplementary Movie 3
This movie shows how portions of different crowns contribute to the transverse view of the reconstruction containing a single 14.5 nm repeat seen in Fig. 2a of paper and Supplementary Movie 2):

The 14.5 nm thick segment is initially positioned and oriented as in Fig. 2a, and then progressively moves away from the bare zone through two more repeats. The filament appears to rotate by 30 degrees for each 14.5 nm of movement along the filament axis (see Supplementary Movie 2). The initial and final positions of the segments are shown in Supplementary Fig. 2.

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Supplementary Movie 4
This movie provides a three-dimensional perspective on the fitting of the heads of the modified smooth muscle HMM atomic structure (PDB1i843) into the J-motif of the filament reconstruction (cf. Fig. 3a of paper):

The filament is oriented with the bare zone at the top. The view moves from one side of the motif to the other around a vertical axis (cf. Fig. 1 of paper and Supplementary Movie 1). A rod-like region of density can be seen connecting the bottom of the "J" structure to the underlying surface of the filament core (red asterisk in Fig. 3a of paper). This is the proposed location of the initial (N-terminal) portion of the S2 fragment of the myosin tail. A small volume of unfilled density in the light chain domains could accommodate the putative 50% larger volume of the tarantula regulatory light chain (Ref. 26) compared with the vertebrate RLC used in the fitting. Note: while the new model differs from the "splayed heads" structures proposed previously (see Fig. 3 legend of paper), the current and earlier models agree in having interactions between myosin heads that are on the same helical track but in adjacent crowns (see Fig. 5 of paper).

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Supplementary Movie 5
This movie shows different views of the space filling atomic model of PDB 1i84 after modification to fit the "J" motif of the reconstruction (cf. Figs 3b and 5a of paper). The bare zone direction is towards the top. The model rotates around a vertical axis through 360 degrees to show views from all sides.

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Supplementary Movie 6
Movie showing how S2 fits into the reconstruction (cf. Fig. 4 of paper):

The initial view shows the J-motif (bare zone at top) fitted with the two heads (Fig. 3a of paper), together with the N-terminal portion of the associated S2 (red; cf. Fig. 5b of paper). The view moves through 90 degrees to expose the S2 and its sloping path towards the subfilaments, and then rotates to produce a horizontal orientation, with bare zone towards the right (cf. Fig. 4a of paper). The view now rotates around a vertical axis, reaching an orientation similar to that in Fig. 4b of the paper after 90 degrees, then continuing to complete a 360 degree rotation, showing the two heads and the S2 from all sides in this horizontal plane

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